Datasets¶
Explore the experimental data distributed with GraphFLA. The collection contains 163 biological sequence datasets and 16 experimental collections across six research domains. Individual sequence datasets may describe different assays or subsets from the same study; a collection can include measurements and supporting lookup tables.
Worked dataset tutorials show how to prepare and analyze nine experimental and computational examples. Reproducible data examples provide five small, reproducible inputs, including a generated hyperparameter search.
Repository links below open the original tables or collection folders. Data cards and tutorials record sources, response definitions and interpretation limits.
Biological sequences¶
163 datasets.
- Anderson MPH CaPTM
- Anderson MPH CdPTM
- Anderson MPH CoPTM
- Anderson MPH CuPTM
- Anderson MPH MgPTM
- Anderson MPH MnPTM
- Bakerlee2022 hap 37C
- Bakerlee2022 hap 4NQO
- Bakerlee2022 hap YPDA
- Bakerlee2022 hap gu
- Bakerlee2022 hap salt
- Bakerlee2022 hap suloc
- Bakerlee2022 hom 37C
- Bakerlee2022 hom 4NQO
- Bakerlee2022 hom YPDA
- Bakerlee2022 hom gu
- Bakerlee2022 hom salt
- Bakerlee2022 hom suloc
- Bank2016a
- Bank2016b
- Bendixsen2019 hdv
- Bendixsen2019 ligase
- Bridgham2009
- Centurion2019
- Chou2011
- Diaz-Colunga colorants
- Diaz-Colunga pseudo
- Domingo2018
- Frohlich21 OXA-48 ic50 CAZtraj1
- Frohlich21 OXA-48 ic50 CAZtraj2
- Frohlich21 OXA-48 ic50 CAZtraj3
- Frohlich21 OXA-48 ic50 PIPtraj1
- Frohlich21 OXA-48 ic50 PIPtraj2
- Frohlich21 OXA-48 ic50 PIPtraj3
- Guerrero2019 C muridarum GroEL
- Guerrero2019 C muridarum LON
- Guerrero2019 C muridarum WT
- Guerrero2019 E coli GroEL
- Guerrero2019 E coli LON
- Guerrero2019 E coli WT
- Guerrero2019 L grayi GroEL
- Guerrero2019 L grayi LON
- Guerrero2019 L grayi WT
- Hall2010 diploid
- Hall2010 haploid
- Hall2019 Acetate
- Hall2019 Beef
- Hall2019 Casamino
- Hall2019 Glucose
- Hall2019 Milk
- Hall2019 NAG
- Hall2019 Rhamnose
- Hall2019 Trypsin
- Hall2020 NfsA ec50 2039
- Hall2020 NfsA ec50 3637
- Jalal2020 NBS
- Jalal2020 parS
- Johnston2024 TrpB3A
- Johnston2024 TrpB3B
- Johnston2024 TrpB3C
- Johnston2024 TrpB3D
- Johnston2024 TrpB3E
- Johnston2024 TrpB3F
- Johnston2024 TrpB3G
- Johnston2024 TrpB3H
- Johnston2024 TrpB3I
- Johnston2024 TrpB4
- Khan2011Flynn2013 DM25
- Khan2011Flynn2013 DM25 EGTA
- Khan2011Flynn2013 DM25 guanazole
- Kuo2020
- Lite2020 ParD2
- Lite2020 ParD3
- Lozovsky2009Jiang2013 Jiang2013
- Lozovsky2009Jiang2013 Lozovsky2009
- Lozovsky DHFR ic50 c57
- Lozovsky DHFR ic50 c58
- Lozovsky DHFR ic50 c59
- Lozovsky DHFR ic50 c60
- Lozovsky DHFR ic50 c61
- Lunzer2005 fitness
- Lunzer2005 nad
- Lunzer2005 nadp
- Malcolm1990
- Meini2015
- Michael2024 LamB
- Michael2024 Lspec
- Michael2024 OmpF
- Michael2024 Ospec
- Michael2024 base
- Mira2015 TEM AM
- Mira2015 TEM AMC
- Mira2015 TEM AMP
- Mira2015 TEM CAZ
- Mira2015 TEM CEC
- Mira2015 TEM CPD
- Mira2015 TEM CPR
- Mira2015 TEM CRO
- Mira2015 TEM CTT
- Mira2015 TEM CTX
- Mira2015 TEM CXM
- Mira2015 TEM FEP
- Mira2015 TEM SAM
- Mira2015 TEM TZP
- Mira2015 TEM ZOX
- Moulana2022 ACE2
- Moulana2023 CB6
- Moulana2023 CoV555
- Moulana2023 REGN10987
- Moulana2023 S309
- NEW Chen2023 CreiLOV
- NEW Rotrattanadumrong2022 F1*U(m) Experimental exploration of a ribozyme neutral network using evolutionary algorithm and deep learning
- Ogbunugafor22 cyc
- Ogbunugafor22 pyr
- Palmer2015
- Palmer DHFR ic75
- Papkou2023 DHFR
- Phillips2021 CR6261 h1
- Phillips2021 CR6261 h9
- Phillips2021 CR9114 fluB
- Phillips2021 CR9114 h1
- Phillips2021 CR9114 h3
- Phillips2023 G189E
- Phillips2023 MA90
- Phillips2023 SI06
- Podgornaia2015 PhoQ
- Poelwijk2019
- Schulz2025
- Skwara2023 Butyrate
- Skwara2023 GE biomass
- Skwara2023 Kehe data
- Skwara2023 Langenheder
- Skwara2023 pyoverdine
- Skwara2023 starch data
- Soo2021 30C
- Soo2021 37C
- Sunden AP
- Tamer DHFR kcat trajg
- Tamer DHFR kcat trajr
- Tamer DHFR ki trajg
- Tamer DHFR ki trajr
- Tu2022 T7
- Tu2022 TEV
- Weinreich2006Tan2011 Tan2011
- Weinreich2006Tan2011 Weinreich2006
- Westmann2024
- Whitlock2000
- Wong2018 brca2
- Wong2018 ikbkap
- Wong2018 smn1
- Wu2016 GB1
- Wu2020 Bei89
- Wu2020 Bk79
- Wu2020 Bris07L194
- Wu2020 Bris07P194
- Wu2020 HK68
- Wu2020 Mos99
- Wu2020 NDako16
- daSilva2010 CCR5
- daSilva2010 CXCR5
- deVisser2009
- new PTE catact 2NH
- new PTE catact butyrate
Chemical biology¶
3 collections.
Chemistry¶
3 collections.
Materials¶
2 collections.
Microbiology¶
5 collections.
Pharmacology¶
3 collections.